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In Silico Biol.
2005;5(4):415-8.

CMDWave: conserved motifs detection using wavelets.

Riaz
T, Li
KB, Tang
F, Krishnan
A.

Source

Bioinformatics Institute, 30 Biopolis Street, Singapore 138671, Singapore.
[email-masked]

Abstract

CMDWave (Conserved Motif Detection using WAVElets) is a web server that
predicts conserved motifs in protein sequences. A set of query protein sequences
are first aligned using ClustalW to obtain equal sized sequences. CMDWave then
converts the sequences into a numerical representation using electron-ion
interaction potential (EIIP). This is
followed by a wavelet decomposition and reconstruction. A new similarity metric
along with thresholding is then used to identify conserved motifs across all the
query sequences. Users need not specify the number of motifs to be identified.
For larger groups of sequences, results can be emailed to the
users.

PMID:

16268786

[PubMed - indexed for MEDLINE]

MeSH
Terms, Substances

MeSH Terms

Amino Acid Motifs*

Databases, Protein

Internet

Proteins/chemistry

Proteins/genetics

Sequence Analysis, Protein*

Software*

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Proteins

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